助教們好:
不好意思打擾，我目前已經將wrf成功編譯，正在嘗試執行
使用的腳本如下:
#!/bin/bash -l
#SBATCH -A ACD112218
#SBATCH -N 1
#SBATCH --ntasks-per-node=40
#SBATCH --cpus-per-task=1
#SBATCH -J wrfrun
#SBATCH -p ctest
#SBATCH --exclusive
#SBATCH -d singleton
#SBATCH -t 0:30:00
#SBATCH -o wrfPrac-%j.out
module purge
module load hdf5-1.8.21-t
module load compiler/intel/2019u5
module load netcdf-c-4.7.3-t
module load netcdf-fortran-4.4.5-t
module list
export OMP_NUM_THREADS=1
ln -sf namelist.input-VALIDATE namelist.input
/usr/bin/time -p mpirun -np 40 ./wrf.exe
mkdir VALIDATE
mv rsl.* namelist.input namelist.output VALIDATE
mv wrfo* VALIDATE
ln -sf namelist.input-TIMING namelist.input
/usr/bin/time -p mpirun -np 40 ./wrf.exe
mkdir TIMING
mv rsl.* namelist.input namelist.output TIMING
echo "finish running"
Running Log 如下
[u7807382@lgn303 WRF_practice_kit]$ cat wrfPrac-8893883.out
Currently Loaded Modules:
1) hdf5-1.8.21-t 3) netcdf-c-4.7.3-t
2) compiler/intel/2019u5 4) netcdf-fortran-4.4.5-t
starting wrf task 28 of 40
starting wrf task 34 of 40
starting wrf task 22 of 40
starting wrf task 25 of 40
starting wrf task 31 of 40
starting wrf task 27 of 40
starting wrf task 30 of 40
starting wrf task 23 of 40
starting wrf task 24 of 40
starting wrf task 35 of 40
starting wrf task 26 of 40
starting wrf task 38 of 40
starting wrf task 21 of 40
starting wrf task 36 of 40
starting wrf task 20 of 40
starting wrf task 29 of 40
starting wrf task 32 of 40
starting wrf task 37 of 40
starting wrf task 39 of 40
starting wrf task 2 of 40
starting wrf task 15 of 40
starting wrf task 1 of 40
starting wrf task 14 of 40
starting wrf task 10 of 40
starting wrf task 6 of 40
starting wrf task 12 of 40
starting wrf task 33 of 40
starting wrf task 3 of 40
starting wrf task 7 of 40
starting wrf task 9 of 40
starting wrf task 17 of 40
starting wrf task 0 of 40
starting wrf task 4 of 40
starting wrf task 5 of 40
starting wrf task 16 of 40
starting wrf task 18 of 40
starting wrf task 19 of 40
starting wrf task 8 of 40
starting wrf task 11 of 40
starting wrf task 13 of 40
real 330.75
user 0.03
sys 0.07
starting wrf task 20 of 40
starting wrf task 21 of 40
starting wrf task 26 of 40
starting wrf task 27 of 40
starting wrf task 28 of 40
starting wrf task 29 of 40
starting wrf task 34 of 40
starting wrf task 39 of 40
starting wrf task 15 of 40
starting wrf task 16 of 40
starting wrf task 18 of 40
starting wrf task 31 of 40
starting wrf task 19 of 40
starting wrf task 11 of 40
starting wrf task 38 of 40
starting wrf task 35 of 40
starting wrf task 33 of 40
starting wrf task 25 of 40
starting wrf task 24 of 40
starting wrf task 22 of 40
starting wrf task 23 of 40
starting wrf task 36 of 40
starting wrf task 10 of 40
starting wrf task 37 of 40
starting wrf task 30 of 40
starting wrf task 32 of 40
starting wrf task 7 of 40
starting wrf task 13 of 40
starting wrf task 0 of 40
starting wrf task 5 of 40
starting wrf task 12 of 40
starting wrf task 14 of 40
starting wrf task 1 of 40
starting wrf task 4 of 40
starting wrf task 9 of 40
starting wrf task 17 of 40
starting wrf task 3 of 40
[mpiexec@cpn3087] real 1.10
目前在執行時遇到以下三個問題:
- 在VALIDATE中，rsl.error.00*都有出現
wrf: SUCCESS COMPLETE WRF，但是前面有一些錯誤訊息，請問這樣有成功執行嗎?以下是rsl.error.0001的完整內容
[u7807382@lgn303 VALIDATE]$ cat rsl.error.0000
taskid: 0 hostname: cpn3052
module_io_quilt_old.F 2931 F
Quilting with 1 groups of 0 I/O tasks.
Ntasks in X 5 , ntasks in Y 8
*************************************
Configuring physics suite 'conus'
mp_physics: 8
cu_physics: 0*
ra_lw_physics: 4
ra_sw_physics: 4
bl_pbl_physics: 2
sf_sfclay_physics: 2
sf_surface_physics: 2
(* = option overrides suite setting)
*************************************
Domain # 1: dx = 3000.000 m
WRF V4.2.1 MODEL
*************************************
Parent domain
ids,ide,jds,jde 1 1500 1 1500
ims,ime,jms,jme -4 307 -4 195
ips,ipe,jps,jpe 1 300 1 188
*************************************
DYNAMICS OPTION: Eulerian Mass Coordinate
alloc_space_field: domain 1 , 1996055616 bytes allocated
med_initialdata_input: calling input_input
Input data is acceptable to use: wrfinput_d01
CURRENT DATE = 2019-05-05_22:00:00
SIMULATION START DATE = 2019-05-05_18:00:00
Timing for processing wrfinput file (stream 0) for domain 1: 55.29344 elapsed seconds
Max map factor in domain 1 = 1.12. Scale the dt in the model accordingly.
D01: Time step = 18.0000000 (s)
D01: Grid Distance = 3.00000000 (km)
D01: Grid Distance Ratio dt/dx = 6.00000000 (s/km)
D01: Ratio Including Maximum Map Factor = 6.69506025 (s/km)
D01: NML defined reasonable_time_step_ratio = 6.00000000
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
INITIALIZE THREE Noah LSM RELATED TABLES
Skipping over LUTYPE = USGS
LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
ThompMP: read qr_acr_qgV2.dat instead of computing
ThompMP: read qr_acr_qsV2.dat instead of computing
ThompMP: read freezeH2O.dat instead of computing
mediation_integrate.G 1944 DATASET=HISTORY
mediation_integrate.G 1945 grid%id 1 grid%oid 1
Timing for Writing wrfout_d01_2019-05-05_22:00:00 for domain 1: 51.82892 elapsed seconds
Input data is acceptable to use: wrfbdy_d01
Timing for processing lateral boundary for domain 1: 1.59826 elapsed seconds
WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS = 1
Tile Strategy is not specified. Assuming 1D-Y
WRF TILE 1 IS 1 IE 300 JS 1 JE 188
WRF NUMBER OF TILES = 1
Timing for main: time 2019-05-05_22:00:18 on domain 1: 169.33875 elapsed seconds
mediation_integrate.G 1944 DATASET=HISTORY
mediation_integrate.G 1945 grid%id 1 grid%oid 2
Timing for Writing wrfout_d01_2019-05-05_22:00:18 for domain 1: 35.91587 elapsed seconds
Timing for main: time 2019-05-05_22:00:36 on domain 1: 51.11222 elapsed seconds
open_hist_w : error opening wrfout_d01_2019-05-05_22:00:36 for writing. ***
mediation_integrate.G 1944 DATASET=HISTORY
mediation_integrate.G 1945 grid%id 1 grid%oid 2
Timing for Writing wrfout_d01_2019-05-05_22:00:36 for domain 1: 16.55020 elapsed seconds
Timing for main: time 2019-05-05_22:00:54 on domain 1: 31.76314 elapsed seconds
open_hist_w : error opening wrfout_d01_2019-05-05_22:00:54 for writing. ***
mediation_integrate.G 1944 DATASET=HISTORY
mediation_integrate.G 1945 grid%id 1 grid%oid 2
Timing for Writing wrfout_d01_2019-05-05_22:00:54 for domain 1: 16.52525 elapsed seconds
wrf: SUCCESS COMPLETE WRF
- 我檢查了一下
wrfout，但卻有兩個檔案的檔案大小非常小，僅有512byte，且用cat cat wrfout_d01_2019-05-05_22\:00\:36檢查發現這兩個檔案都沒有東西，似乎沒有完全正常運作，僅有完成一半的工作，請問為甚麼會有這種情況發生呢，也想請問一下可能的解決方式。以下是VALIDATE中wrfout的檔案大小:
[u7807382@lgn303 VALIDATE]$ du -sh wrfout_d01_2019-05-05_22\:00\:*
11G wrfout_d01_2019-05-05_22:00:00
2.6G wrfout_d01_2019-05-05_22:00:18
512 wrfout_d01_2019-05-05_22:00:36
512 wrfout_d01_2019-05-05_22:00:54
- 檢查I
./TIMING/rsl.out.0000卻發現裡面沒有任何內容，檔案大小是0，似乎是不預期的中止程式，但不確定為甚麼會這樣
以上是這幾天遇到的問題，不好意思打擾了
謝謝助教!